Genome sequence data: management, storage, and visualization

Genome sequence data: management, storage, and visualization.

Over the last few years there has been a revolution in DNA sequencing technology that has brought down the cost of DNA sequencing and made the sequencing of an increasing number of genomes both feasible and cost effective. There has also been a dramatic shift in the type of sequence data being generated, with vast numbers of short reads or pairs of short reads replacing the traditional relative...

GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data

Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expression data, it may be useful to have access to the sequences upstream of the genes, or to the cellular location of their protein products. Such information is currently stored in different formats at different sites in a w...

Data Visualization Management Systems

BIOINFORMATICS APPLICATIONS NOTE CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data

UNLABELLED Currently, new bacterial genomes are being published on a monthly basis. With the growing amount of genome sequence data, there is a demand for a flexible and easy-to-maintain structure for storing sequence data and results from bioinformatic analysis. More than 150 sequenced bacterial genomes are now available, and comparisons of properties for taxonomically similar organisms are no...